BtaEX6009022 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017266 | ITGA6
Description
integrin, alpha 6 [Source:HGNC Symbol;Acc:HGNC:6142]
Coordinates
chr2:24173155-24176648:-
Coord C1 exon
chr2:24176524-24176648
Coord A exon
chr2:24175075-24175154
Coord C2 exon
chr2:24173155-24173410
Length
80 bp
Sequences
Splice sites
3' ss Seq
CTATGCTGCTTTCTCCGCAGCTG
3' ss Score
10.98
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
ATTGCTCGTGGGGGCTCCCCGTGCAGTGGCCCTTCCACTGCAGAAGGCCAACAGAACAGGAGGCTTGTACAGCTGCGACATCACCTCCCGGGGGCCGTGCACGCGAATTGAATTTGATAACGACG
Seq A exon
CTGACCCTTCATCGGAAAGCAAGGAAGATCAGTGGATGGGAGTCACTGTCCAAAGCCAGGGTCCAGGCGGCAAAGTTGTG
Seq C2 exon
ACATGTGCTCATCGATATGAAAAAAGACAACATGTTAATACGAAGCAGGAATCCCGAGACATCTTTGGAAGGTGCTACGTCCTAAGTCAGAATCTCAGGATTGAAGATGATATGGATGGAGGAGACTGGAGTTTTTGTGATGGCCGGTTGAGAGGTCATGAAAAATTTGGTTCTTGCCAGCAAGGTGTAGCAGCTACTTTTACTAAAGACTTCCATTACATTGCGTTTGGAGCCCCAGGCACTTACAACTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017266-'4-2,'4-1,5-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=0.593 C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGCACGCGAATTGAATTT
R:
CCGGCCATCACAAAAACTCCA
Band lengths:
178-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]