RnoEX6030305 @ rn6
Exon Skipping
Gene
ENSRNOG00000007905 | Itga7
Description
integrin subunit alpha 7 [Source:RGD Symbol;Acc:71022]
Coordinates
chr7:3360453-3362637:+
Coord C1 exon
chr7:3360453-3360580
Coord A exon
chr7:3360675-3360754
Coord C2 exon
chr7:3362382-3362637
Length
80 bp
Sequences
Splice sites
3' ss Seq
TTCCCAATGTATTGCCTCAGCTA
3' ss Score
4.69
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
Exon sequences
Seq C1 exon
GCTGCTGGTGGGTGCCCCCCAGGCCCTGGCTCTTCCCGGACAGCAGGCAAATCGCACGGGAGGCCTCTTTGCTTGTCCCCTGAGCCTAGAGGAGACAGACTGCTACAGAGTGGACATCGACAGGGGAG
Seq A exon
CTAATGTGCAGAAGGAAAGCAAGGAGAACCAGTGGCTGGGAGTCAGCGTGCGGAGCCAGGGAGCCGGGGGCAAGGTTGTT
Seq C2 exon
ACCTGTGCACACCGATATGAGTCTCGACAGAGAGTGGACCAGGTTTTGGAGACTCGGGATGTGATTGGTCGTTGCTTTGTGCTGAGCCAGGACCTGGCCATCCGTGATGAGTTGGATGGTGGGGAGTGGAAGTTCTGTGAAGGGCGCCCCCAGGGCCACGAACAATTTGGGTTCTGCCAGCAGGGCACAGCTGCCACCTTCTCCCCCGACAGCCACTACCTCATTTTTGGGGCTCCAGGAACCTATAACTGGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007905-'6-4,'6-2,9-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.008
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGAGCCTAGAGGAGACAG
R:
CCACCATCCAACTCATCACGG
Band lengths:
173-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]