BtaEX6022792 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006010 | STAB2
Description
Bos taurus stabilin 2 (STAB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206679]
Coordinates
chr5:67748930-67751659:+
Coord C1 exon
chr5:67748930-67749076
Coord A exon
chr5:67750342-67750398
Coord C2 exon
chr5:67751533-67751659
Length
57 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTCTTGCATACTAGGGG
3' ss Score
8.67
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GGCGACCTCTTCCTGAACAGCCAAACGTGCAGAATTGTGCAGCGGGAGCTCTTATTTGACTTGGGTGTGGCCTACGGTATCGACTGTCTACTGATTGACCCCACCTTGGGGGGCCGTTGTGACACATTTACCACTTTCGATGTCTCG
Seq A exon
GGGAATTGTGGAAACTGTATCTTTACTCCCAGTTGCCCCAAGTGGACTAAACCAAAG
Seq C2 exon
GGCCAGAAGCAGAAGTGTCTGTACGACTTGCCCTTCAAGAGGAACCTGGAAGGCTGCAGACAGCTTTGCACTCTGGTGATACAGCTCCCCAAGTGCTGCAAGGGCTACTTCTGGCCAGACTGTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006010-'56-62,'56-61,57-62=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PD(24.1=65.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCCGTTGTGACACATTTA
R:
GCACTTGGGGAGCTGTATCAC
Band lengths:
134-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]