MmuEX6050472 @ mm10
Exon Skipping
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86863448-86866757:-
Coord C1 exon
chr10:86866611-86866757
Coord A exon
chr10:86864992-86865048
Coord C2 exon
chr10:86863448-86863577
Length
57 bp
Sequences
Splice sites
3' ss Seq
TCTCTCATATTGCACCCTAGGGG
3' ss Score
8.46
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GGAGAGCTCTTTCTAAATGGACAAATGTGCAGGATTATACAGCGGAGACTCTTGTTTGACGGAGGTGTGGCCTATGGCATTGACTGCCTGCTAATGGATCCTACCGAAGGTGGCCGATGTGACACTTTTACTACCTTCAATATTCCG
Seq A exon
GGGGAATGTGGGAGCTGTTTCTCCACTCCCAGATGCCCACTACAGAGCAAACCAAAG
Seq C2 exon
GGTGTGAGGAAGAAGTGTATCTACAACCCGTTACCTTTCAGGAGGGATGTGGAAGGCTGTCAGAACCTGTGCACCCTGGTGGTCCATGTCCCGCGGTGCTGCAGTGGTTACTTCATGCCAGACTGTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-'77-83,'77-82,78-83
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PD(24.1=65.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGTTTGACGGAGGTGTGG
R:
TCCCTCCTGAAAGGTAACGGG
Band lengths:
145-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types