MmuEX6050472 @ mm9
Exon Skipping
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86326193-86329502:-
Coord C1 exon
chr10:86329356-86329502
Coord A exon
chr10:86327737-86327793
Coord C2 exon
chr10:86326193-86326322
Length
57 bp
Sequences
Splice sites
3' ss Seq
TCTCTCATATTGCACCCTAGGGG
3' ss Score
8.46
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GGAGAGCTCTTTCTAAATGGACAAATGTGCAGGATTATACAGCGGAGACTCTTGTTTGACGGAGGTGTGGCCTATGGCATTGACTGCCTGCTAATGGATCCTACCGAAGGTGGCCGATGTGACACTTTTACTACCTTCAATATTCCG
Seq A exon
GGGGAATGTGGGAGCTGTTTCTCCACTCCCAGATGCCCACTACAGAGCAAACCAAAG
Seq C2 exon
GGTGTGAGGAAGAAGTGTATCTACAACCCGTTACCTTTCAGGAGGGATGTGGAAGGCTGTCAGAACCTGTGCACCCTGGTGGTCCATGTCCCGCGGTGCTGCAGTGGTTACTTCATGCCAGACTGTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-'58-63,'58-62,59-63=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PD(24.1=65.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGTTTGACGGAGGTGTGG
R:
TCCCTCCTGAAAGGTAACGGG
Band lengths:
145-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: