GgaEX1055787 @ galGal3
Exon Skipping
Gene
ENSGALG00000012751 | STAB2
Description
NA
Coordinates
chr1:56834027-56836240:-
Coord C1 exon
chr1:56836094-56836240
Coord A exon
chr1:56834535-56834591
Coord C2 exon
chr1:56834027-56834150
Length
57 bp
Sequences
Splice sites
3' ss Seq
CTTTCAATTATGTACAACAGGGG
3' ss Score
5.28
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
GGCACCCTTTTCCTGAATGACAGACAGTGCAAGATCGTGCAGCGGCAGCTGGAGTTTGATGGAGGCATTGCCTATGGCATAGACTGCCTGCTGATGGACCCCAGCCTAGGGGGCCGCTGCGACAGCTTCTTCGCCGTGGACATCATG
Seq A exon
GGGTACTGTGCTAGCTGCTTCAGTGGTGCCAAATGCCCTCCAGGGACAAAACCAAAG
Seq C2 exon
GAAGGGATCTACCGGTGCACGTATGATTCCTACGGGCTACGGAGGGATGGCTGCCGCAGGAACTGCTCCATGGTCATCCACACGGCCAAGTGCTGCAAGGGGTACTTCGGGCCCGACTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012751-'52-54,'52-53,53-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PD(24.1=65.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGACTGCCTGCTGATGGACC
R:
GGATGACCATGGAGCAGTTCC
Band lengths:
147-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]