DreEX0075666 @ danRer10
Exon Skipping
Gene
ENSDARG00000045748 | stab2
Description
stabilin 2 [Source:ZFIN;Acc:ZDB-GENE-041210-336]
Coordinates
chr4:10755623-10756625:+
Coord C1 exon
chr4:10755623-10755769
Coord A exon
chr4:10755929-10755988
Coord C2 exon
chr4:10756502-10756625
Length
60 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTTGCTGTAATAGTTA
3' ss Score
6.79
5' ss Seq
GTGGTAATT
5' ss Score
5.8
Exon sequences
Seq C1 exon
GGGGAGCTTTATGTGAATCATAAAGGCTGTCGTATTGTAAAGAGATATCTTGATTTTAATGGAGGCATGATTTATGGCATTGAATGTCTGCTGAATCCTCCAAGCCTTGGGGGACGTTGTGATCACAGGCAAACCATTGATTTCACG
Seq A exon
TTAGCTTGCCGGAGTTGTGGGAGCAGTATTATGGATTGTCCACTTGGAAGCAAGCCAGTG
Seq C2 exon
GGAGAACAAGAGTGTGTCCTTCCAGATTCTGTTATATCAAGGGGATCAAAATGTCAATCAACATGTAAAGTGGTCGTGTGGAAGCCCAAGTGCTGTTCAGGGTACTACGGCAGGGACTGTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045748-'63-63,'63-62,64-63
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PD(24.1=65.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGTTGTGATCACAGGCAA
R:
GTACCCTGAACAGCACTTGGG
Band lengths:
141-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]