RnoEX0086558 @ rn6
Exon Skipping
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27392260-27395100:-
Coord C1 exon
chr7:27394954-27395100
Coord A exon
chr7:27393434-27393490
Coord C2 exon
chr7:27392260-27392389
Length
57 bp
Sequences
Splice sites
3' ss Seq
TCTCTCGCATTGCACCCTAGGGG
3' ss Score
7.84
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GGTGAGCTCTTTCTAAACGAACAAATGTGCAGGATCATACAACGGGGACTCTTGTTTGACGTGGGTGTGGCCTATGGCATTGACTGCCTACTCATGGATCCTACCCTAGGTGGCCGATGTGACACTTTTACTACCTTCGATATTCCG
Seq A exon
GGGGAGTGCGGGAGCTGCATCTTCACTCCCAGATGCCCACTGAAGAGCAAGCCAAAG
Seq C2 exon
GGCGTGAAGAAGAAGTGTATCTACAACCCGTTACCTTTCAGGAGGAACGTGGAAGGCTGCCAGAACCTGTGCACCCTGGTGATCCAAACCCCCAGGTGCTGCCATGGTTACTTCATGCCAGACTGTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948-'70-67,'70-66,71-67
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PD(24.1=65.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGTTTGACGTGGGTGTGG
R:
TCCTCCTGAAAGGTAACGGGT
Band lengths:
144-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]