BtaEX6023523 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002313 | ITPR2
Description
inositol 1,4,5-trisphosphate receptor type 2 [Source:RefSeq peptide;Acc:NP_776794]
Coordinates
chr5:83726366-83798978:+
Coord C1 exon
chr5:83726366-83726474
Coord A exon
chr5:83797997-83798105
Coord C2 exon
chr5:83798791-83798978
Length
109 bp
Sequences
Splice sites
3' ss Seq
CTTATCCTTTTTATTATTAGGGT
3' ss Score
8.95
5' ss Seq
GAGGCAAGA
5' ss Score
2.31
Exon sequences
Seq C1 exon
GTTGATTAATCATACAAAGAAACTGATGGAAAAAGAAGAAAAATTGTGCATTAAAATTCTTCAGACTTTACGAGAAATGCTAGAGAAGAAAGACAGCTTTGTGGAAGAG
Seq A exon
GGTAATACATTAAGAAAAATCCTCCTGAATCGATACTTTAAAGGTGATTACGGAGTCTCTATAAATGGACACCTCTCTGGAACCTACTGCAAAACTGCACAAGGAGGAG
Seq C2 exon
GAAGCTTTTCTGGGCAAGATTCAGATAAGATGGGGATATCCATGTCAGATATTCAGTGTCTCCTGGATAAAGAAGGTGCATCTGAACTTGTCATCGATGTTATAGTGAATACCAAAAATGACAGAATTTTTTCAGAAGGCATCTTACTTGGCATTGCCTTGCTGGAAGGAGGAAACACACAAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002313-'50-51,'50-50,51-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATTAAAATTCTTCAGACTTTACG
R:
GTGTGTTTCCTCCTTCCAGCA
Band lengths:
243-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]