MmuEX6007933 @ mm10
Exon Skipping
Gene
ENSMUSG00000030287 | Itpr2
Description
inositol 1,4,5-triphosphate receptor 2 [Source:MGI Symbol;Acc:MGI:99418]
Coordinates
chr6:146240272-146291633:-
Coord C1 exon
chr6:146291525-146291633
Coord A exon
chr6:146241137-146241245
Coord C2 exon
chr6:146240272-146240459
Length
109 bp
Sequences
Splice sites
3' ss Seq
CGGGTCTCCTTTGCCTCTAGGGT
3' ss Score
10.11
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GCTGATTAATCACACAAAGAAACTGATGGAGAAAGAAGAAAAGCTGTGCATTAAAATCCTCCAGACTTTACGGGAGATGCTGGAGAAGAAAGACAGCTTCATGGAAGAG
Seq A exon
GGTAGCACATTACGGCGAATCCTCCTGAATCGGTACTTCAAGGGTGATCATAGCATTAGTGTGAACGGACCTCTGTCAGGAGCCTATGCCAAGACAGCACAAGTGGGAG
Seq C2 exon
GAAGCTTCTCTGGACAGGATTCAGATAAGAAGGGCATTTCAATGTCCGATATCCAGTGTTTGCTGGACAAAGAAGGAGCATCCGAACTTGTCATCGATGTCATTGTGAACACCAAAAACGACAGGATCTTTTCCGAAGGAATTTTGCTTGGCATTGCCTTGCTGGAAGGAGGAAACACACAGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030287-'61-58,'61-57,66-58
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCCTCCAGACTTTACGGGAG
R:
TGGGTCTGTGTGTTTCCTCCT
Band lengths:
242-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types