GgaEX0020782 @ galGal4
Exon Skipping
Gene
ENSGALG00000014071 | ITPR2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:HGNC Symbol;Acc:HGNC:6181]
Coordinates
chr1:67885962-67928441:-
Coord C1 exon
chr1:67928333-67928441
Coord A exon
chr1:67889222-67889330
Coord C2 exon
chr1:67885962-67886145
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTTTTACATTTCTCTTAAAGGGC
3' ss Score
8.56
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GTTGATAAATCACACAAAGAAGCTGATGGAGAAAGAAGAAAAGCTCTGCATTAAAATTCTTCAGACATTACGAGAAATGCTTGACAAGAAAACTAACTTTGCAGAAGAG
Seq A exon
GGCAACACTTTAAGGAAAATACTCCTGTACCGCTACTTTAAAGGAGAATATGGAAGTGGTATGAATGGGCCTCTGTCTGCCAGCTACAGCAAAACTGCACAAGTGGGAG
Seq C2 exon
TATTCAACTTACCAGCAACTGAAGGAGCAAAAAAAGTCAGAAAAATTCTTTAAAGTCCTGTATGACCGTATGAAGGCTGCTCAGCAAGAGATACGGTCAACAGTGACAGTGAACACTATTGATTTGGGGAGCAAAAAGAAAGATGATGATAGTGACCTAACCATATCTGTACCCAAAAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014071_MULTIEX3-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.145
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000022784fB8543
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACACAAAGAAGCTGATGGAGA
R:
TCATCTTTCTTTTTGCTCCCCA
Band lengths:
246-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]