GgaEX0020782 @ galGal3
Exon Skipping
Gene
ENSGALG00000014071 | ITPR2
Description
NA
Coordinates
chr1:69897466-69938449:-
Coord C1 exon
chr1:69938341-69938449
Coord A exon
chr1:69899228-69899336
Coord C2 exon
chr1:69897466-69897653
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTTTTACATTTCTCTTAAAGGGC
3' ss Score
8.56
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GTTGATAAATCACACAAAGAAGCTGATGGAGAAAGAAGAAAAGCTCTGCATTAAAATTCTTCAGACATTACGAGAAATGCTTGACAAGAAAACTAACTTTGCAGAAGAG
Seq A exon
GGCAACACTTTAAGGAAAATACTCCTGTACCGCTACTTTAAAGGAGAATATGGAAGTGGTATGAATGGGCCTCTGTCTGCCAGCTACAGCAAAACTGCACAAGTGGGAG
Seq C2 exon
GTGGATTTGTAGGACAAGACTCAGATAAGTCTGGAGTATCCATGTTTGATATTCAGTGCCTTCTGGATAAAGAAGGTGCATCAGAACTTGTCATAGACGTTATAGTCAGCACCAAAAATGACAGAATTTTCTCAGAAGGCATTTTGCTTGGTATTGCGTTGCTTGAAGGTGGAAATGCACAAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014071-'40-48,'40-47,43-48
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAAAGAAGAAAAGCTCTGCA
R:
TCCACCTTCAAGCAACGCAAT
Band lengths:
256-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]