RnoEX6015643 @ rn6
Exon Skipping
Gene
ENSRNOG00000001804 | Itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:RGD Symbol;Acc:69649]
Coordinates
chr4:180555000-180589445:-
Coord C1 exon
chr4:180589337-180589445
Coord A exon
chr4:180555607-180555715
Coord C2 exon
chr4:180555000-180555187
Length
109 bp
Sequences
Splice sites
3' ss Seq
ATTCTCTCCTTTTCTTCTAGGGT
3' ss Score
11.2
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GCTGATTAATCACACAAAGAAACTGATGGAAAAAGAAGAAAAACTGTGCATTAAAATCCTCCAGACGTTACGGGAGATGCTGGAGAAGAAAGACAGCTTCATGGAAGAG
Seq A exon
GGTAGCACATTACGGAAAATCCTCCTGAATCGGTACTTCAAGGGTGACCACAGCGTTGGTGTGAACGGACCTCTGTCAGGAGCCTACGCCAAGACAGCACAAGTGGGAG
Seq C2 exon
GGGGCTTCACTGGACAGGATGCCGATAAGACGGGGATTTCCATGTCCGATATCCAGTGTTTGCTGGACAAGGAAGGGGCCTCCGAACTTGTCATCGATGTCATTGTGAACACCAAAAACGACAGGATCTTTTCCGAGGGCATCTTGCTTGGCATTGCCCTGCTGGAAGGAGGAAACACACAAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001804-'53-50,'53-49,58-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTCCAGACGTTACGGGAG
R:
CTGGGTTTGTGTGTTTCCTCCT
Band lengths:
242-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]