DreEX6064849 @ danRer10
Exon Skipping
Gene
ENSDARG00000011909 | itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:ZFIN;Acc:ZDB-GENE-050419-192]
Coordinates
chr18:16036249-16065021:+
Coord C1 exon
chr18:16036249-16036357
Coord A exon
chr18:16064643-16064736
Coord C2 exon
chr18:16064834-16065021
Length
94 bp
Sequences
Splice sites
3' ss Seq
CCTCTTTTGTGTCTGTTCAGGGC
3' ss Score
10.81
5' ss Seq
GAGGTGCGA
5' ss Score
5.51
Exon sequences
Seq C1 exon
GCTCATCAAGCACACCAAGAAACTAATGGAGAAAGAGGAGAAGTTGTGCATCAAGATCCTACAGACTCTGCGAGAGATGCTGGATAGGAGAGAGATGTTTGATGAGAAG
Seq A exon
GGCAATGCACTGAGGAAGAGTCTCCTTGCTCACTACTTCGGGAACCACACCAAAGCCCTGGAGTACAGCAGCAGCAACAGCTCATCATCTGGAG
Seq C2 exon
GTGGCTCTCCAGGACAGGACTCTGATAAACCAGGCACAAGCTTAGCAGATATCCAGTGTGTGCTGGACAATGTCGGAGCTTCCGAGCTGGTCGTCGACCTCATAGTCAGCACTAAAAATGACCGGATCTTTGAGGAGAGCATTTTACTGGGCATCGCACTGCTGAGAGGAGGGAATACACAAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011909-'42-45,'42-44,44-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.312 C2=0.183
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGAGAGATGCTGGATAGGA
R:
TGCTCTCCTCAAAGATCCGGT
Band lengths:
182-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]