RnoEX6061806 @ rn6
Exon Skipping
Gene
ENSRNOG00000052795 | Itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:RGD Symbol;Acc:2934]
Coordinates
chr20:5700943-5701555:+
Coord C1 exon
chr20:5700943-5701051
Coord A exon
chr20:5701135-5701225
Coord C2 exon
chr20:5701386-5701555
Length
91 bp
Sequences
Splice sites
3' ss Seq
GCCGCATCTCACCTTTCCAGGGC
3' ss Score
8.89
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GCTCATCCGTCACACCAAGGGTCTCATGGAGTCGGAGGAGAAGCTGTGCGTGAAGGTGCTGCGGACGCTGCAGCAGATGCTGCAGAAGAAGAGCAAGTATGGGGACCGG
Seq A exon
GGCAACCAGCTAAGGAAGATGCTGCTGCAGAATTACCTCCAGAACCGGAAGTCCGGTCCCCGGGGCGAGCTCACTGACCCCACAGGCTCTG
Seq C2 exon
GCGTGGATCAGGACTGGTCCGCCATCGCAGCCACCCAGTGCCGGCTGGACAAGGAGGGGGCCACCAAGTTGGTGTGTGATCTCATCACCAGCACCAAGAACGAGAAGATCTTCCAGGAGAGCATCGGCCTGGCCATCCGCCTGCTGGACGGGGGCAACACTGAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052795-'46-53,'46-50,47-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.387 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGAAGCTGTGCGTGAAG
R:
CGTTCTTGGTGCTGGTGATGA
Band lengths:
177-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]