GgaEX7010843 @ galGal4
Exon Skipping
Gene
ENSGALG00000003149 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:HGNC Symbol;Acc:HGNC:6182]
Coordinates
chr26:4572436-4573164:-
Coord C1 exon
chr26:4573056-4573164
Coord A exon
chr26:4572823-4572913
Coord C2 exon
chr26:4572436-4572605
Length
91 bp
Sequences
Splice sites
3' ss Seq
ACGTTTATTTGTCTTGGCAGGGC
3' ss Score
8.87
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCTGGTGCAGCACACCAAGGACCTGATGGAGACGGAGGAGAAGCTGTGCATCAAAGTGTTACGGACGCTGCAGCAGATGCTGGTGAAGAGGAACAAGTACGGTGAGAGG
Seq A exon
GGCAACCTGCTGCGAAAAATGCTCCTGAACAATTACCTGCAGAACAAGAAGTCCAGCTCCAAAGGGGAAATTGTGGATGCTGCTGGAGGAG
Seq C2 exon
GCCAGGACCAGGACTGGTCTGCTATTGCCGCTGTCCAGTGCCGGCTGGACCGAGAAGGAGCCACCAAGCTGGTGGCTGACCTCATCATGAACACCAAGAACGAGAAGATCTTCCAGGAGAGCATCCTGCTCGCCATTCGGCTGCTGGACGGGGGCAACACCGAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149-'43-45,'43-43,44-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.065 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGAGACGGAGGAGAAGCT
R:
GGTGTTCATGATGAGGTCAGCC
Band lengths:
180-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]