HsaEX6046687 @ hg19
Exon Skipping
Gene
ENSG00000096433 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:HGNC Symbol;Acc:6182]
Coordinates
chr6:33652134-33652720:+
Coord C1 exon
chr6:33652134-33652242
Coord A exon
chr6:33652375-33652465
Coord C2 exon
chr6:33652551-33652720
Length
91 bp
Sequences
Splice sites
3' ss Seq
TCACTCCCATCCTCCCCCAGGGC
3' ss Score
11.61
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GCTGATCCAGCACACCAAGGACCTCATGGAGTCGGAGGAGAAGCTGTGCATCAAGGTGCTGCGGACCCTGCAGCAGATGCTGCTCAAGAAGACCAAGTACGGGGACCGG
Seq A exon
GGCAACCAGCTGCGCAAGATGCTGCTGCAAAACTACCTCCAGAACCGGAAGTCCACCTCGCGGGGGGACCTTCCCGACCCCATAGGCACTG
Seq C2 exon
GCCTGGACCCAGACTGGTCGGCAATCGCAGCCACCCAGTGCCGGCTGGACAAGGAGGGGGCCACCAAGTTGGTATGCGACCTCATCACCAGCACCAAGAACGAGAAGATCTTCCAGGAGAGCATCGGCCTGGCCATCCACCTGCTGGATGGTGGCAACACAGAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096433-'45-46,'45-45,46-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.258 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGTCGGAGGAGAAGCTG
R:
CTTGGTGCTGGTGATGAGGTC
Band lengths:
182-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)