DreEX0040358 @ danRer10
Exon Skipping
Gene
ENSDARG00000061741 | itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:ZFIN;Acc:ZDB-GENE-070605-1]
Coordinates
chr8:21292401-21294908:+
Coord C1 exon
chr8:21292401-21292509
Coord A exon
chr8:21294199-21294286
Coord C2 exon
chr8:21294733-21294908
Length
88 bp
Sequences
Splice sites
3' ss Seq
TCACTTCTGTCTTTTTGCAGGGC
3' ss Score
12.46
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATTGATCCAGCACACAAAGGCCCTCATGAACTCCGATGAGAAGCTCTGTATCAAAGTCCTCAGAACTCTGCAGGAAATGCTCATTCGCGAGTTGGATTTCGATGAAAAG
Seq A exon
GGCTTTGCCTTAAGAAAGGTGTTGCTCCAGAACTACCTCTACAATAACAAAAAGAACATAAAAGCAGAGCTTGTTGAACACGCAGGAG
Seq C2 exon
GTGCAGAGGGCGAGAGAGACTGGCTAACAGTGGCAGCATTACAGTGTCGCCTGGACAAAGAAGGCGGCACCAAACTCTTCACAGACCTCATCACCAGCACCAAGAATGAGAAGATCTTCCAGGAGAGCATTCAGCTCGCTATCTGTCTGCTAGAAGGGGGAAACACAGAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061741-'44-46,'44-45,46-46
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCATTCGCGAGTTGGATT
R:
AGCAGACAGATAGCGAGCTGA
Band lengths:
183-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]