BtaEX6096982 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013245 | ITPR3
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 3 (ITPR3), mRNA. [Source:RefSeq mRNA;Acc:NM_174370]
Coordinates
chr23:7744286-7745043:+
Coord C1 exon
chr23:7744286-7744394
Coord A exon
chr23:7744678-7744768
Coord C2 exon
chr23:7744874-7745043
Length
91 bp
Sequences
Splice sites
3' ss Seq
CCTCGCTCCCTTCCCTGCAGGGC
3' ss Score
11.96
5' ss Seq
CCGGTCAGT
5' ss Score
7.53
Exon sequences
Seq C1 exon
GCTGATCCAGCACACCAAGGACCTCATGGAGTCGGAGGAGAAGCTGTGCGTCAAGGTGCTAAGGACGCTGCAGCAGATGCTGCTGAAGAAGACCAAGTATGGGGACCGG
Seq A exon
GGCAACCAGCTGCGCAAGATGCTGCTACAAAACTACCTCCAGAACCGGAAGTCCAGCTCGAGGGGGGACCTCCCGGACCCCATGGGCACCG
Seq C2 exon
GCCTGGACCAAGACTGGTCAGCAATCGCAGCCACTCAGTGCCGGCTGGACAAGGAGGGGGCCACCAAGCTGGTGTGTGACCTCATCACCAGCACCAAGAATGAGAAGATCTTCCAGGAGAGCATCGGCCTGGCCATCCGCCTGCTGGACGGCGGCAACACCGAGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013245-'44-41,'44-40,45-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.323 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGAAGCTGTGCGTCAAG
R:
CTTGGTGCTGGTGATGAGGTC
Band lengths:
173-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]