MmuEX6076238 @ mm10
Exon Skipping
Gene
ENSMUSG00000042644 | Itpr3
Description
inositol 1,4,5-triphosphate receptor 3 [Source:MGI Symbol;Acc:MGI:96624]
Coordinates
chr17:27111464-27112026:+
Coord C1 exon
chr17:27111464-27111572
Coord A exon
chr17:27111665-27111755
Coord C2 exon
chr17:27111857-27112026
Length
91 bp
Sequences
Splice sites
3' ss Seq
GCCTCATCTTACCCACCCAGGGC
3' ss Score
7.29
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GCTCATCCGTCACACTAAGGGTCTCATGGAGTCCGAGGAGAAGTTGTGCGTGAAGGTGCTGCGGACGCTGCAGCAGATGCTGCTGAAGAAGAGCAAGTTCGGGGACCGG
Seq A exon
GGCAACCAGCTGCGGAAAATGCTGCTGCAGAATTATCTCCAGAACCGCAAGTCTGGCGCCCGGGGCGAGCTCACTGACCCCACGGGCTCTG
Seq C2 exon
GCCTGGATCAGGACTGGTCAGCCATCGCCGCCACCCAGTGCCGGCTGGACAAGGAGGGGGCCACCAAGCTGGTGTGTGATCTTATCACCAGCACCAAGAACGAGAAGATCTTCCAGGAGAGCATTGGCCTGGCCATCCGCCTGCTGGACGGGGGCAACACCGAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042644-'51-58,'51-55,61-58=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.258 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGAGAAGTTGTGCGTGAA
R:
TTCTCGTTCTTGGTGCTGGTG
Band lengths:
182-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types