BtaEX6023758 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020715 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr5:92177994-92194336:-
Coord C1 exon
chr5:92194303-92194336
Coord A exon
chr5:92186611-92186809
Coord C2 exon
chr5:92177994-92178116
Length
199 bp
Sequences
Splice sites
3' ss Seq
TCTCCCCGCCCTCCCCCCAGGTT
3' ss Score
12.76
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AATCTTCATCAAAATTCAGACACTTCAGCAAAAG
Seq A exon
GTTTGATAGAGAAAGTGACAACCGAACTATCCACATCCATCTGTCAGCTAATTGATATCCATTGCAGCAGCTTCTGTGCAGATTTCCAGCCTCTACACGCACCTCTGTATAGTGTCTCCTGTGTAAATCTTGGGCTCCATTCCCACCTTAGCTTCACAGTGTATGCAGCTCACAATATTCCAGAAACCTGGGTGCACAG
Seq C2 exon
CTATAAAGCATTTTCTTTCTCCTGTTGGCTTACATATGCTGGAAAGAAGCTGTGCCAAGTGAGAAACTGCAGAAATATTCCTGTCAAAAAGTTGTTTTTTTTCTTGGTCAACTGGAATGAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020715-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0079219=PI3K_C2=PU(0.1=0.0)
C2:
PF0079219=PI3K_C2=PU(31.8=97.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCATCAAAATTCAGACACTTCAGC
R:
GTTTCATTCCAGTTGACCAAGAA
Band lengths:
154-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]