MmuEX6007663 @ mm10
Exon Skipping
Gene
ENSMUSG00000030228 | Pik3c2g
Description
phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide [Source:MGI Symbol;Acc:MGI:1203730]
Coordinates
chr6:139715861-139730484:+
Coord C1 exon
chr6:139715861-139715894
Coord A exon
chr6:139719989-139720184
Coord C2 exon
chr6:139730362-139730484
Length
196 bp
Sequences
Splice sites
3' ss Seq
CCTATCCTTTATTCCCGTAGGCT
3' ss Score
9.85
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AATTTTCATCAGAATTCAGAGACTTCAAAAAAAG
Seq A exon
GCTTCATAGAGAGAGTGACAGCTGAACTATCAAGGTCCATCTATCAGCTAATCGACGTGTACTGCAGTACCTTCTGTACAGATTTCCAGCCTGTGCACACACCCGGAGGTGTCTCCCGTGTCCACGCTGGGCTCCAGTCCCACCTGAGCTTCACGGTGTGTTCCCTGCACAATGTCCCAGAGACTTGGGCACACAG
Seq C2 exon
CTACAAAGCATTTTCGTTTTCCTGCTGGCTCACATATGCTGGGAAGAAGCTGTGCCAAGTGAAAAGCTGCAGACCCCTGCCAGTCACAAAGTCATTCTCCCTTTTGGTCAACTGGAATGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030228-'20-23,'20-22,22-23
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0079219=PI3K_C2=PU(0.1=0.0)
C2:
PF0079219=PI3K_C2=PU(31.5=97.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTTCATCAGAATTCAGAGACTTCA
R:
TTCATTCCAGTTGACCAAAAGGGA
Band lengths:
154-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types