HsaEX6065385 @ hg19
Exon Skipping
Gene
ENSG00000139144 | PIK3C2G
Description
phosphoinositide-3-kinase, class 2, gamma polypeptide [Source:HGNC Symbol;Acc:8973]
Coordinates
chr12:18496261-18524245:+
Coord C1 exon
chr12:18496261-18496294
Coord A exon
chr12:18499575-18499770
Coord C2 exon
chr12:18524114-18524245
Length
196 bp
Sequences
Splice sites
3' ss Seq
CTCTATCTCTTCCTTTCTAGGCT
3' ss Score
11.14
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AATTTTTATCAAAGTTCAGAGACTTCAGCAAAAG
Seq A exon
GCTTGATAGAGAAGGTAACAACTGAACTATCCACATCCATCTACCAGCTAATCAATGTCTACTGTAACAGCTTTTATGCAGATTTTCAGCCTGTAAATGTACCTAGATGCACTTCCTATCTAAATCCCGGGCTTCCTTCCCACCTCAGCTTCACAGTGTATGCAGCACACAACATTCCAGAAACCTGGGTGCACAG
Seq C2 exon
GATCAATTTTCCCCTTGAAATAAAGTCACTTCCAAGGGAATCCATGCTCACTGTAAAACTGTTTGGGATTGCCTGTGCAACCAACAATGCAAATTTACTGGCGTGGACTTGTCTTCCACTGTTTCCAAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139144-'9-11,'9-9,10-11=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0079219=PI3K_C2=PU(29.4=56.1)
C2:
PF0079219=PI3K_C2=FE(34.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTATCAAAGTTCAGAGACTTCAGCA
R:
TCTTTTGGAAACAGTGGAAGACA
Band lengths:
162-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)