HsaEX6065385 @ hg38
Exon Skipping
Gene
ENSG00000139144 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr12:18343327-18363088:+
Coord C1 exon
chr12:18343327-18343360
Coord A exon
chr12:18346641-18346836
Coord C2 exon
chr12:18362764-18363088
Length
196 bp
Sequences
Splice sites
3' ss Seq
CTCTATCTCTTCCTTTCTAGGCT
3' ss Score
11.14
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AATTTTTATCAAAGTTCAGAGACTTCAGCAAAAG
Seq A exon
GCTTGATAGAGAAGGTAACAACTGAACTATCCACATCCATCTACCAGCTAATCAATGTCTACTGTAACAGCTTTTATGCAGATTTTCAGCCTGTAAATGTACCTAGATGCACTTCCTATCTAAATCCCGGGCTTCCTTCCCACCTCAGCTTCACAGTGTATGCAGCACACAACATTCCAGAAACCTGGGTGCACAG
Seq C2 exon
CTACAAAGCGTTTTCTTTTACCTGTTGGCTTACATATGCTGGAAAGAAGCTGTGCCAAGTGAGAAACTACAGAAATATTCCAGACAAGAAATTATTTTTTTTCTTGGTCAACTGGAATGAAACGTAAGTTTAATCTTTACTGTATCTGGATCATTTATGTAATAAATGTCAGCTTTTTCCCCCTTTTTTTAAAAGCAAGGGATGTAATTTAAAAAAAATATGCTGCCAGTTGATTTGATTCAGTGGTATGATAAGTACACTAGGGCTAATAGATAACTGATTGTTCAATTCAACAGATTAAAAGTCCATTTAGAAACCTAGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139144-'19-19,'19-18,21-19=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0079219=PI3K_C2=PU(29.4=56.1)
C2:
PF0079219=PI3K_C2=PU(31.5=97.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTCAGAGACTTCAGCAAAAG
R:
TGAATCAAATCAACTGGCAGCA
Band lengths:
265-461
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains