GgaEX6002845 @ galGal4
Exon Skipping
Gene
ENSGALG00000013117 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr1:64174302-64185067:+
Coord C1 exon
chr1:64174302-64174329
Coord A exon
chr1:64181551-64181746
Coord C2 exon
chr1:64184945-64185067
Length
196 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTTCTCTCCTCTTAGCAT
3' ss Score
9.71
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GATTCACTTCAACATGTGGAAGCACAAG
Seq A exon
CATTAACGGAAGCTGCTGTGACAGAGCTCTCCATGGCCATCTCTCATCTCATCCATGTGTACAGCAGCAGCTTTGATACAGATTTCCAGGTTGCCAACATACCTAGAAGCCCTTCTCGTGCAGACATCAGCCTTGATTCCCAGCTCAGCTTCACTGTCTATGCTGCTCATAACATTCCTGAAGCCTGGGTGAACAG
Seq C2 exon
ATACAAACTTTTTTCTTTTTCCTGTTTGCTAACCTATGCTGGGAAGACAATATGTCAAGTGAAGATTTGCAAAAATATACCTGTTAGAAAATCCTTCTTTTTCTTGACAGACTGGAATGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013117-'9-13,'9-11,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0079219=PI3K_C2=PU(0.9=1.5)
C2:
PF0079219=PI3K_C2=PU(36.9=97.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTTCAACATGTGGAAGCACA
R:
TCTCATTCCAGTCTGTCAAGAAA
Band lengths:
147-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]