DreEX0006782 @ danRer10
Exon Skipping
Gene
ENSDARG00000099803 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr18:50917125-50917831:-
Coord C1 exon
chr18:50917801-50917831
Coord A exon
chr18:50917398-50917587
Coord C2 exon
chr18:50917125-50917247
Length
190 bp
Sequences
Splice sites
3' ss Seq
TGGGTGTGTGTGTGTTTCAGCTG
3' ss Score
10.03
5' ss Seq
CGGGTACGA
5' ss Score
8.06
Exon sequences
Seq C1 exon
ACTCTGGACCACAGCGGTGACCTTCACACAG
Seq A exon
CTGTAGTGGCGCTCCACCGCTCTCTCCTGAAGCTGCTTCAGATTTTCTTCAGGAGTTTTGATCTGGACTTCAGTGTTTGGGGAACACACACACACTCACACACACCGCCGTCAGACGTGCAGAATCACCGCGGCGTTCTGCAGCTCAGCCTGACAAGTTTACACACACTGCAGCCCGGCTGGAGGAACGG
Seq C2 exon
GTATGATCACCTCCGCATGAGTGTGTCTGTCACACACAGCGGCAGGAATCTGGCTGAACCGGTGCAGTGTGAGAACATCAGCACGTCTCTGCAGCTCCACGGCAGGATTCACTGCAATCGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099803-'10-10,'10-8,11-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.094 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0079219=PI3K_C2=PU(31.2=95.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]