BtaEX6024537 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012265 | VWF
Description
Bos taurus von Willebrand factor (VWF), mRNA. [Source:RefSeq mRNA;Acc:NM_001205308]
Coordinates
chr5:104695940-104704284:+
Coord C1 exon
chr5:104695940-104696139
Coord A exon
chr5:104703751-104703853
Coord C2 exon
chr5:104704210-104704284
Length
103 bp
Sequences
Splice sites
3' ss Seq
TGAACCTCGTTGTCCCTCAGCTC
3' ss Score
6.68
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
CTGTGTCCTGCCCGCCCTCCCTGATCTACAACCACTGTGAGAGTGGCTGCCCCCGGCAGTGTGAGGGCAACTCGAGCTCCTGCGGGGACCATCCCTTGGAAGGCTGCTTCTGCCCTCCGCACCAAGTGATGCTGGAAGGCAGCTGTGTCCCTGAGGAGGCCTGTACCCAGTGCGTCGGTGACGATGGCATCCGGCACCAG
Seq A exon
CTCCTGGAAACGTGGGTCCCAGACCATCAGCCCTGCCAGATCTGCACGTGCCTCAGCGGGCGGAAGGTCAACTGCACGACACAGCCCTGCCCCTCGGCCGGAG
Seq C2 exon
TGCCCACGTGCGGCCCATGTGAGGTGGCCCGGCTCCGGCAGAGCACGCAGCAGTGCTGTCCCGAGTACGAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012265-'44-44,'44-43,46-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=77.6),PF0009313=VWC=PU(16.2=17.9)
A:
PF0009313=VWC=FE(45.9=100)
C2:
PF0009313=VWC=FE(33.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTCCCTGATCTACAACCA
R:
CTCGTACTCGGGACAGCACT
Band lengths:
258-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]