MmuEX6007115 @ mm9
Exon Skipping
Gene
ENSMUSG00000001930 | Vwf
Description
Von Willebrand factor homolog [Source:MGI Symbol;Acc:MGI:98941]
Coordinates
chr6:125608734-125613596:+
Coord C1 exon
chr6:125608734-125608933
Coord A exon
chr6:125612983-125613085
Coord C2 exon
chr6:125613522-125613596
Length
103 bp
Sequences
Splice sites
3' ss Seq
TAGACTTGTTTCTCCCTCAGTTC
3' ss Score
6.69
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CTATGTCATGCCCACCGTCCCTGGTGTATAACCACTGTGAGCGTGGCTGCCCTCGGCACTGCGATGGGAACACTAGCTTCTGTGGGGACCATCCCTCAGAAGGCTGCTTCTGTCCCCAACACCAAGTTTTTCTGGAAGGCAGCTGTGTCCCCGAGGAGGCCTGCACTCAGTGTGTTGGCGAGGATGGAGTTCGACATCAG
Seq A exon
TTCCTGGAGACCTGGGTCCCAGACCATCAGCCCTGTCAGATCTGTATGTGCCTCAGTGGGAGAAAGATTAACTGCACTGCCCAGCCGTGTCCCACAGCCCGAG
Seq C2 exon
CTCCCACGTGTGGCCCATGTGAAGTGGCTCGCCTCAAGCAGAGCACAAACCTGTGCTGCCCAGAGTATGAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001930-'52-52,'52-51,54-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=77.6),PF0009313=VWC=PU(12.7=13.4)
A:
PF0009313=VWC=FE(47.9=100)
C2:
PF0009313=VWC=FE(35.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACCGTCCCTGGTGTATAA
R:
AGGTTTGTGCTCTGCTTGAGG
Band lengths:
242-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: