GgaEX1063595 @ galGal4
Exon Skipping
Gene
ENSGALG00000017272 | VWF
Description
von Willebrand factor [Source:HGNC Symbol;Acc:HGNC:12726]
Coordinates
chr1:74365314-74371294:-
Coord C1 exon
chr1:74371089-74371294
Coord A exon
chr1:74365497-74365599
Coord C2 exon
chr1:74365314-74365388
Length
103 bp
Sequences
Splice sites
3' ss Seq
TTATTTATTCTTTTCTGCAGCAC
3' ss Score
9.68
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CAATGAAGTGTCCCACATATTTGATATATGATCACTGCTACAAAGCCTGTGTAAAGATCTGTGAGAATAGTACCAATCTCAGTGTCTGCAAAGATTATCCTACAGAGGGCTGCTTCTGTCCAAAAGGGCAGGTAGTTTTCAATGACAGCTGTGTTGGTGAAGAAGTTTGCACGCAATGCATCAGTGAAGATGGCACCTACCATCAG
Seq A exon
CACATGGAAACATGGATTCCTTCCAATGAGCCTTGCAAGATCTGTACTTGTCTTGACAACAGAAAAGTAAACTGCACTGTTCGACCTTGCACTACTATCAAAA
Seq C2 exon
CTGTGCAATGTGGCCCCTGTGAAGTTCCTCGTCTGCGCAGGGACCCTAACCAGTGCTGCCCTGTGTATGAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017272-'65-87,'65-85,68-87
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=78.3),PF0009313=VWC=PU(16.2=17.4)
A:
PF0009313=VWC=FE(45.9=100)
C2:
PF0009313=VWC=FE(33.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAGCCTGTGTAAAGATCTGTGA
R:
CACACTCATACACAGGGCAGC
Band lengths:
242-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]