DreEX6064142 @ danRer10
Exon Skipping
Gene
ENSDARG00000077231 | vwf
Description
von Willebrand factor [Source:ZFIN;Acc:ZDB-GENE-070103-1]
Coordinates
chr18:7245351-7248152:+
Coord C1 exon
chr18:7245351-7245598
Coord A exon
chr18:7247860-7247962
Coord C2 exon
chr18:7248081-7248152
Length
103 bp
Sequences
Splice sites
3' ss Seq
TCATGGTGTGTGCATTTCAGTTC
3' ss Score
7.43
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
CCATGTCGTGCTCAGACTCGATGGAGTACGCTGCCTGCCGAAGTGGATGTTTGGAGCAGTGCGGACAAAGCCAGTTCACACCCGGTGACATGATGGGTGATGGTTTATTGAAAGCCAATGGATCAGTGTGCTTGAACACTCCCACAGAGGGCTGTTTCTGTCCTGAAGGCTCCGTGTTAATGGAAGATAAGTGTGTAGACAGAGAGGCCTGCAGTCAGTGTGTGGAACACAGCGGGAAAACTCACCAG
Seq A exon
TTCATGGAGAGCTGGAATCCTGAGGACAACCCGTGTGTTCTGTGTGTGTGTCTGGACCAGCAGCGCATCAACTGCACAGCTCTGCCCTGCACCAATGCTAAAG
Seq C2 exon
CCCCGGAGTGCGGACAATGTGAGGTTCTCCAGGAGAAGATGGGATCCAAGTGCTGCCCTCAATATGAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077231-'40-43,'40-42,41-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=81.9)
A:
PF0009313=VWC=FE(48.6=100)
C2:
PF0009313=VWC=FE(34.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCGAAGTGGATGTTTGGA
R:
AGAACCTCACATTGTCCGCAC
Band lengths:
242-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]