MmuEX6007115 @ mm10
Exon Skipping
Gene
ENSMUSG00000001930 | Vwf
Description
Von Willebrand factor [Source:MGI Symbol;Acc:MGI:98941]
Coordinates
chr6:125658716-125663578:+
Coord C1 exon
chr6:125658716-125658915
Coord A exon
chr6:125662965-125663067
Coord C2 exon
chr6:125663504-125663578
Length
103 bp
Sequences
Splice sites
3' ss Seq
TAGACTTGTTTCTCCCTCAGTTC
3' ss Score
6.69
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CTATGTCATGCCCACCGTCCCTGGTGTATAACCACTGTGAGCGTGGCTGCCCTCGGCACTGCGATGGGAACACTAGCTTCTGTGGGGACCATCCCTCAGAAGGCTGCTTCTGTCCCCAACACCAAGTTTTTCTGGAAGGCAGCTGTGTCCCCGAGGAGGCCTGCACTCAGTGTGTTGGCGAGGATGGAGTTCGACATCAG
Seq A exon
TTCCTGGAGACCTGGGTCCCAGACCATCAGCCCTGTCAGATCTGTATGTGCCTCAGTGGGAGAAAGATTAACTGCACTGCCCAGCCGTGTCCCACAGCCCGAG
Seq C2 exon
CTCCCACGTGTGGCCCATGTGAAGTGGCTCGCCTCAAGCAGAGCACAAACCTGTGCTGCCCAGAGTATGAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001930-'67-74,'67-69,70-74=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=77.6),PF0009313=VWC=PU(12.7=13.4)
A:
PF0009313=VWC=FE(47.9=100)
C2:
PF0009313=VWC=FE(35.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACCGTCCCTGGTGTATAA
R:
AGGTTTGTGCTCTGCTTGAGG
Band lengths:
242-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types