RnoEX0098742 @ rn6
Exon Skipping
Gene
ENSRNOG00000019689 | Vwf
Description
von Willebrand factor [Source:RGD Symbol;Acc:621759]
Coordinates
chr4:158194653-158196607:+
Coord C1 exon
chr4:158194653-158194753
Coord A exon
chr4:158195985-158196087
Coord C2 exon
chr4:158196533-158196607
Length
103 bp
Sequences
Splice sites
3' ss Seq
TAATCTTGTTTCCCCCTCAGTTC
3' ss Score
7.93
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
TGTAGCAGCGCCCCCTGCTGGCATGTGTGCTGCACAGTCAGGCCTGAACTACTTTTTGCGGGGCAGTTGATTGGGGGTCCTCCTGCCTTGAGTGTGCCTGG
Seq A exon
TTCCTAGAGACCTGGGTCCCAGACCATCAGCCCTGTCAGATCTGTATGTGCCTCAGTGGGAGGAAGATTAACTGCACTGCACAGCCATGTCCCACAGCCCGGG
Seq C2 exon
CTCCCACCTGTGGCCCTTGTGAAGTGGCTCGTCTCAAGCAGAGTGCAGACCTGTGCTGCCCAGAGTATGAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019689-'50-44,'50-43,51-44
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0009313=VWC=FE(47.9=100)
C2:
PF0009313=VWC=FE(35.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTGCTGGCATGTGTG
R:
ACTCATACTCTGGGCAGCACA
Band lengths:
162-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]