BtaEX6024543 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012265 | VWF
Description
Bos taurus von Willebrand factor (VWF), mRNA. [Source:RefSeq mRNA;Acc:NM_001205308]
Coordinates
chr5:104682961-104685525:+
Coord C1 exon
chr5:104682961-104683125
Coord A exon
chr5:104684659-104684702
Coord C2 exon
chr5:104685348-104685525
Length
44 bp
Sequences
Splice sites
3' ss Seq
CTGACTTGTGTCTGTTTCAGGGT
3' ss Score
12.34
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GAGTGGCTGTGTTCCCCATCGGGATTGGGGACCAGTATGATGCAGCCCAGCTGAGGGTCTTGGCGGGTCCGGGGGCCAGCTCCAACGTGGCAGAGCTCCAGCGGATCGAAGACCTCCCCAGCATGGTTGCCCTTGGCAACTCTTTCTTCCAGAGGCTATGCTCTG
Seq A exon
GGTTCGTCAGTGTTTGCGTGGATGAGGACGGGAATGAGAGGAGG
Seq C2 exon
CCTGGGGACGTCTGGACCTTGCTGGATCAGTGCCACACGGTGACTTGCCTGCCAGATGGCCAGACCTTGCTGAAGAGTCACCGGGTCAACTGCGATCAGGGGCCACAGCCATCATGCCCCGACGGCCAGACCCCGCTCAGGATGGAGGAAGCCTGTGGCTGCCGCTGGGCCTGTCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012265-'36-36,'36-35,37-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.083
Domain overlap (PFAM):
C1:
PF0009223=VWA=PD(25.9=80.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCGAAGACCTCCCCAGCAT
R:
GACTCTTCAGCAAGGTCTGGC
Band lengths:
141-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]