MmuEX6007120 @ mm9
Exon Skipping
Gene
ENSMUSG00000001930 | Vwf
Description
Von Willebrand factor homolog [Source:MGI Symbol;Acc:MGI:98941]
Coordinates
chr6:125597763-125599312:+
Coord C1 exon
chr6:125597763-125597927
Coord A exon
chr6:125598800-125598843
Coord C2 exon
chr6:125599135-125599312
Length
44 bp
Sequences
Splice sites
3' ss Seq
TCCTTCTGTGTCTGTTTCAGGGT
3' ss Score
13.64
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GAGTGGCAGTGTTTCCCGTTGGGGTTGGGGATCGGTATGATGAAGCCCAGCTGAGGATCTTGGCAGGCCCTGGGGCCAGCTCCAATGTGGTAAAGCTCCAGCAAGTTGAAGACCTCTCCACCATGGCCACCCTGGGCAACTCCTTCTTCCACAAACTGTGTTCTG
Seq A exon
GGTTTTCTGGAGTTTGTGTGGATGAAGATGGGAATGAGAAGAGG
Seq C2 exon
CCTGGGGATGTCTGGACCTTGCCGGATCAGTGCCACACAGTGACTTGCTTGGCAAATGGCCAGACCTTGCTGCAGAGTCATCGTGTCAATTGTGACCATGGACCCCGGCCTTCATGTGCCAACAGCCAGTCTCCTGTTCGGGTGGAGGAGACGTGTGGCTGCCGCTGGACCTGCCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001930-'44-44,'44-43,45-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF0009223=VWA=PD(26.3=82.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAGCTCCAATGTGGTAAA
R:
TTGCCAAGCAAGTCACTGTGT
Band lengths:
147-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: