RnoEX6015164 @ rn6
Exon Skipping
Gene
ENSRNOG00000019689 | Vwf
Description
von Willebrand factor [Source:RGD Symbol;Acc:621759]
Coordinates
chr4:158181112-158182657:+
Coord C1 exon
chr4:158181112-158181276
Coord A exon
chr4:158182147-158182190
Coord C2 exon
chr4:158182480-158182657
Length
44 bp
Sequences
Splice sites
3' ss Seq
TCCTTCTGTGTCCGTTCCAGGGT
3' ss Score
11.31
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GGGTGGCAGTGTTCCCCATTGGGGTTGGGGATCGATATGATGAAGCCCAGCTGAGGATCTTGGCAGGCCCTGGGGCCAGCTCCAATGTGGTAAAGCTCCAGCAAGTTGAAGACCTCCTCACCATGGTCACCCCGGGAAACTCCTTCTTCCACAGACTGTGTTCTG
Seq A exon
GGTTTTCTGGAGTTTGTGTGGATGAGGATGGGAACGAGAAGAGG
Seq C2 exon
CCTGGAGACGTCTGGACCTTGCCAGATCAGTGCCACACAGTGACTTGCTTGGCAAATGGTCAGACCTTGTTGCAGAGTCATCGGGTCAATTGTGACCATGGACCCCGGCCTTCATGTTCCAACAGCCAGTCTCCCGTTCGGGTGGAGGAGACCTGTGGCTGCCGCTGGACCTGCCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019689-'39-37,'39-36,40-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF0009223=VWA=PD(25.4=78.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAGCTCCAATGTGGTAAA
R:
TTGCCAAGCAAGTCACTGTGT
Band lengths:
147-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]