DreEX0084728 @ danRer10
Exon Skipping
Gene
ENSDARG00000077231 | vwf
Description
von Willebrand factor [Source:ZFIN;Acc:ZDB-GENE-070103-1]
Coordinates
chr18:7229307-7234601:+
Coord C1 exon
chr18:7229307-7229471
Coord A exon
chr18:7229558-7229604
Coord C2 exon
chr18:7234424-7234601
Length
47 bp
Sequences
Splice sites
3' ss Seq
ATGATCAAATTATCCCTCAGCGG
3' ss Score
5.77
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GTGTGTCGGTGTTTCCTATTGGTCTGGGTAAGCAGTATGATCAGATTGAAGTGAACACACTCGCAGGCCCACAGGCTCAGGAAAACGTCATTCTGCTCGGCAGCACAGAGTATCTGCTTTCCATGGCTGCGTTTGACCAGTCCTTCCCTGACAAACTCTGCAGAG
Seq A exon
CGGGTCCTCCCGGAGTGTGTGTGGATGATGAAGGGAATGAAAGAAAG
Seq C2 exon
CCCGGTGAGACGTGGATGCTGGCAGACGGCTGTCACTCAGTGCTGTGCAACCCATCCGGCACAATAACAATGCAGAGCCACCGTATCAACTGCGAGAAGATGGAGCCTCCCGTCTGTAAAAACAACCTCCCAGCCCTGCGCTACAATCACCACTGCGGTTGTACCTGGACCTGCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077231_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.250 C2=0.033
Domain overlap (PFAM):
C1:
PF0009223=VWA=PD(25.7=78.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCTGCTTTCCATGGCTGCG
R:
GATACGGTGGCTCTGCATTGT
Band lengths:
142-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]