GgaEX1063592 @ galGal4
Exon Skipping
Gene
ENSGALG00000017272 | VWF
Description
von Willebrand factor [Source:HGNC Symbol;Acc:HGNC:12726]
Coordinates
chr1:74383613-74390904:-
Coord C1 exon
chr1:74390740-74390904
Coord A exon
chr1:74387435-74387478
Coord C2 exon
chr1:74383613-74383790
Length
44 bp
Sequences
Splice sites
3' ss Seq
GATGTTTGCTTCTCTTTCAGATC
3' ss Score
11.32
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AGGTGTCCCTGTTTCCTATTGGAGTTGGGAATGGATATGATGAACAACAACTCAGGACTCTGACTGGGCCATCAGCTGTTAATAGAATCATGAAGCTCCAGAATTTTGAAGATTTATCCACTATGGTCACATTAAATAGTGAATTTATCAATAAAGTGTGCATGG
Seq A exon
ATCCTGTCAGAGAATGTATAGATGAGGATGGAAACAAGAAGAAA
Seq C2 exon
CCTGGTGACAAATGGACATTACCAGATCAATGCCACACTGTGACGTGCTTTCCAGGTGATTACACAGTCTTGGAGAGTCACCAAATTAACTGTGAGAGGATGCCAAAACCTGTGTGTCACAGCAATCTTCCTGCTGTTAAGGTTGAAGAGACTTGTGGCTGCCGATGGATGTGTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017272-'51-68,'51-65,53-68
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.056 C2=0.017
Domain overlap (PFAM):
C1:
PF0009223=VWA=PD(27.0=85.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTGGGCCATCAGCTGTTA
R:
ACAGTGTGGCATTGATCTGGT
Band lengths:
146-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]