MmuEX6007120 @ mm10
Exon Skipping
Gene
ENSMUSG00000001930 | Vwf
Description
Von Willebrand factor [Source:MGI Symbol;Acc:MGI:98941]
Coordinates
chr6:125647745-125649294:+
Coord C1 exon
chr6:125647745-125647909
Coord A exon
chr6:125648782-125648825
Coord C2 exon
chr6:125649117-125649294
Length
44 bp
Sequences
Splice sites
3' ss Seq
TCCTTCTGTGTCTGTTTCAGGGT
3' ss Score
13.64
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GAGTGGCAGTGTTTCCCGTTGGGGTTGGGGATCGGTATGATGAAGCCCAGCTGAGGATCTTGGCAGGCCCTGGGGCCAGCTCCAATGTGGTAAAGCTCCAGCAAGTTGAAGACCTCTCCACCATGGCCACCCTGGGCAACTCCTTCTTCCACAAACTGTGTTCTG
Seq A exon
GGTTTTCTGGAGTTTGTGTGGATGAAGATGGGAATGAGAAGAGG
Seq C2 exon
CCTGGGGATGTCTGGACCTTGCCGGATCAGTGCCACACAGTGACTTGCTTGGCAAATGGCCAGACCTTGCTGCAGAGTCATCGTGTCAATTGTGACCATGGACCCCGGCCTTCATGTGCCAACAGCCAGTCTCCTGTTCGGGTGGAGGAGACGTGTGGCTGCCGCTGGACCTGCCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001930-'49-69,'49-58,60-69=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF0009223=VWA=PD(26.3=82.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAGCTCCAATGTGGTAAA
R:
TTGCCAAGCAAGTCACTGTGT
Band lengths:
147-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types