BtaEX6024828 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021994 | CACNA2D4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:HGNC Symbol;Acc:HGNC:20202]
Coordinates
chr5:108787331-108791428:-
Coord C1 exon
chr5:108791266-108791428
Coord A exon
chr5:108790948-108791079
Coord C2 exon
chr5:108787331-108787391
Length
132 bp
Sequences
Splice sites
3' ss Seq
CCAACAATCTCACCCTTCAGACC
3' ss Score
7.3
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TTCGACTATTACAACTCCGTCCTCCTCAACGAGAAGGACTCGAGCGGGGCATATGTGGAGCTGGGGGCCGAGTTCCTCCTAGAGGCCAACGCGCACTTCAGCGACCTGCTGGTGAACACGACCCTGAGCAGCGTGCAGCTGCCCACCAACGTCTACAACAAAG
Seq A exon
ACCCAGATATCTTGAATGGAATCTACATGTCCGAAGCTCTGAACGCTGTCTTCGTGGAGAACTTCCAGAGAGACCCAACGCTGACCTGGCAGTACTTCGGCAGTTCCACGGGGTTCTTCCGCATCTACCCAG
Seq C2 exon
GCATCAAGTGGACGCCGGATGAGAACGGAGTCATCACCTTCGACTGCCGGAACCGTGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021994-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083996=VWA_N=FE(46.2=100)
A:
PF083996=VWA_N=FE(37.6=100)
C2:
PF083996=VWA_N=PD(2.6=14.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACTATTACAACTCCGTCCTCC
R:
CACGGTTCCGGCAGTCGAA
Band lengths:
218-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]