Special

GgaEX6002680 @ galGal4

Exon Skipping

Gene
ENSGALG00000013007 | CACNA2D4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:HGNC Symbol;Acc:HGNC:20202]
Coordinates
chr1:61211133-61214558:-
Coord C1 exon
chr1:61214396-61214558
Coord A exon
chr1:61212038-61212169
Coord C2 exon
chr1:61211133-61211193
Length
132 bp
Sequences
Splice sites
3' ss Seq
TCTATTCTTTTTCCCTGCAGATC
3' ss Score
12.77
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TTTGATTACTACAACTCCCTCCTGATTAATGAGAAGGATGAAAATGACAATTATGTGGAGCTTGGCGATGAATTCATTCTGGAGCCAAATGAGCATTTCAATAACCTGCTGGTAAACACAACATACAGTGATATCCAGCTCCCTACCAACGTCTACAACAAAG
Seq A exon
ATCCTGACATCCTGAATGGTGTTTACATGTCAGAAGCCTTGAACCCTGTCTTTGTGGATAACTTTGAAAGGGATCCTACACTGACCTGGCAGTACTTTGGTAGCTCCACAGGGTTCTTCAGGCTCTATCCAG
Seq C2 exon
GAATAAAGTGGCTACCAGATGAGAATGGGGTCATCTCCTTCGACTGCAGGAACCGTGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013007-'4-5,'4-4,6-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF083996=VWA_N=FE(46.2=100)
A:
PF083996=VWA_N=FE(37.6=100)
C2:
PF083996=VWA_N=PD(2.6=14.3)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTACTACAACTCCCTCCTGA
R:
CACGGTTCCTGCAGTCGAAG
Band lengths:
218-350
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]