BtaEX6024855 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021994 | CACNA2D4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:HGNC Symbol;Acc:HGNC:20202]
Coordinates
chr5:108735049-108735845:-
Coord C1 exon
chr5:108735793-108735845
Coord A exon
chr5:108735465-108735520
Coord C2 exon
chr5:108735049-108735069
Length
56 bp
Sequences
Splice sites
3' ss Seq
TGACCGCTTCTATCCAACAGGCT
3' ss Score
8.48
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
CCCATCTCTGCCATCCTGTCGGCTACCAGGTGGCTGATGAACGAGCTCCTGCT
Seq A exon
GCTCCTGCTGGAGTGGAGGGCCTGGGGCTCCTGGCGTGGGGACCACAGGGCTGAGG
Seq C2 exon
CCAAGACCGTCTTCCATCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021994-'31-32,'31-31,32-32=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCCATCCTGTCGGCTA
R:
AATGATGGAAGACGGTCTTGG
Band lengths:
69-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]