GgaEX6002703 @ galGal4
Exon Skipping
Gene
ENSGALG00000013007 | CACNA2D4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:HGNC Symbol;Acc:HGNC:20202]
Coordinates
chr1:61122949-61125366:-
Coord C1 exon
chr1:61125314-61125366
Coord A exon
chr1:61124305-61124360
Coord C2 exon
chr1:61122949-61122969
Length
56 bp
Sequences
Splice sites
3' ss Seq
TGTTCTTGCTCTTTCGACAGCTT
3' ss Score
8.87
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
CCAATTTATGCCTTTCTAGCTGCACTGAAATGGCTGATAAGTGATTTCCTCAT
Seq A exon
CTTCCTGTTGGAGTTTAACATGAGTAGCTTCTGGCATTCCGAAAACGTGGCAGACG
Seq C2 exon
CCAAGGCTGTCTTCCATCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013007-'36-40,'36-39,37-40=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGCCTTTCTAGCTGCACTGA
R:
AGTGATGGAAGACAGCCTTGG
Band lengths:
68-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]