DreEX6102127 @ danRer10
Exon Skipping
Gene
ENSDARG00000023886 | cacna2d4b
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4b [Source:ZFIN;Acc:ZDB-GENE-100422-18]
Coordinates
chr25:18930600-18932393:-
Coord C1 exon
chr25:18932341-18932393
Coord A exon
chr25:18932199-18932254
Coord C2 exon
chr25:18930600-18930717
Length
56 bp
Sequences
Splice sites
3' ss Seq
TCTTCAATCTAAACTTTCAGGTT
3' ss Score
9.44
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
CCTTTCTACGCTCTACTGGCCTTAATAAAGTGGTGGTTCTCACATTTTGTGAT
Seq A exon
GTTTATGTTGGAGTTCAACATCTGTGGACTTTGGCATAATGACTATGTGGTGGATG
Seq C2 exon
CTCACAAGCAGAAAAAGGTGGAGCTGATGCAGCCGTGCAACACTGAGTATCCAGGTTTCATGTACGACAAGTCCATACGAGAGACAAACAGCATCATCAAATGTGGCCGCTGTCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023886-'37-38,'37-36,38-38=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTCTACGCTCTACTGGCC
R:
TGTCTCTCGTATGGACTTGTCGT
Band lengths:
139-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]