RnoEX6014838 @ rn6
Exon Skipping
Gene
ENSRNOG00000008031 | Cacna2d4
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 4 [Source:RGD Symbol;Acc:1562038]
Coordinates
chr4:151404058-151404910:+
Coord C1 exon
chr4:151404058-151404110
Coord A exon
chr4:151404565-151404617
Coord C2 exon
chr4:151404890-151404910
Length
53 bp
Sequences
Splice sites
3' ss Seq
CCATGCTCTGTGTCCCGCAGATT
3' ss Score
11.27
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
CCTCTCTCTGCCTTCCTGACGGTGGCCAAGTGGCTACTACATGAATGTCTGCT
Seq A exon
ATTCCTGTTCGAGTGGAGTGCTTGGGGATCTTGGCAGGACAAAGGGTCAGAGG
Seq C2 exon
CCAAAGCTGTCTTCCATCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008031-'45-51,'45-50,46-51=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCTCTGCCTTCCTGACGG
R:
AGTGATGGAAGACAGCTTTGG
Band lengths:
73-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]