Special

BtaEX6025282 @ bosTau6

Exon Skipping

Gene
Description
E1A binding protein p300 [Source:HGNC Symbol;Acc:HGNC:3373]
Coordinates
chr5:112830730-112834116:+
Coord C1 exon
chr5:112830730-112830975
Coord A exon
chr5:112833317-112833410
Coord C2 exon
chr5:112833979-112834116
Length
94 bp
Sequences
Splice sites
3' ss Seq
TGCTTTTTGTTTTGATGTAGGTG
3' ss Score
10.16
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CAATTTTGACTGGAGCACCAGTTGGACTTGGCAGTACTAGCTCTCTAGGGGTGGGTCAACAGTCCACTCCCAGCCTAAGCACTGTCAGTCAGATTGATCCCAGCTCTATAGAAAGAGCCTATGCAGCCCTTGGACTGCCCTATCAAGTAAATCAGATGCCGACCCAGCCCCAGGTGCAAGCGAAGAATCAGCAGAACCAGCAGTCTGGGCAGTCTCCCCAAGGGATGCGGCCCATGAGCAACATGA
Seq A exon
GTGCTAGTCCTATGGGAGTAAATGGAGGTGTAGGGGTTCAACCGTCGAATCTTCTTTCTGACTCGATGTTGCATTCAGCCATAAATTCTCAAAA
Seq C2 exon
CCCAATGATGAGTGACAATGGCAGTGTGGCCTCTCTGGGTCCTATGCCAACAGCAGCTCAACCATCCAGTACTGGAATTCGGAAGCAATGGCATGAAGATATTACTCAGGATCTTCGAAATCATCTTGTCCACAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016198-'11-10,'11-9,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.735 A=1.000 C2=0.894
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
PF0217211=KIX=PU(25.9=44.7)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGTGCAAGCGAAGAATCA
R:
TGCCATTGCTTCCGAATTCCA
Band lengths:
170-264
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]