DreEX6068875 @ danRer10
Exon Skipping
Gene
ENSDARG00000100666 | ep300a
Description
E1A binding protein p300 a [Source:ZFIN;Acc:ZDB-GENE-080403-16]
Coordinates
chr12:18829175-18831050:-
Coord C1 exon
chr12:18830844-18831050
Coord A exon
chr12:18830379-18830484
Coord C2 exon
chr12:18829175-18829297
Length
106 bp
Sequences
Splice sites
3' ss Seq
AGTCACCTTTCTTGTTTTAGGAG
3' ss Score
9.31
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
CTATGATAGCCACTGGAGGTGTGGCGTTAAGTTCTTCCATGGGCAATGTAACTGGTGGTTCACCCAGTGCCCCCAGTCTCAATACCCCAGGGCAGATAGACCCCAGCTCCATCGAGAGGGCATATGCAGCCTTGGGTCTCACATACCAGGGAAACCAGGCTCCCCCTCAACCTATACAGCAAACACAGCGGCCGGTGAACACCTTGG
Seq A exon
GAGCGAATTCCATGGGAGTGAATGGGGCAGTTGGTGGCCAGCCTCAGAATCAGCAATCTAGCCTTCTCCAGGATACAATGCTGCATCTGAACATGAATTCACAAAG
Seq C2 exon
TCTGATAAATGACAGTGGTGTGGGGTCTCTGCCAATGGCCAACCCAGCTGCCAGCGGTAGCATGAGGAAGAGCTGGCATGAGGACATCACCCAGGATCTGCGCAACCACCTGGTACACAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100666-'7-9,'7-7,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.814 A=0.806 C2=0.714
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0217211=KIX=PU(25.9=50.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCAATGTAACTGGTGGTT
R:
GTGATGTCCTCATGCCAGCTC
Band lengths:
258-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]