RnoEX0003430 @ rn6
Exon Skipping
Gene
ENSRNOG00000000190 | AABR07058539.1
Description
NA
Coordinates
chr7:122849248-122853033:+
Coord C1 exon
chr7:122849248-122849493
Coord A exon
chr7:122852256-122852349
Coord C2 exon
chr7:122852896-122853033
Length
94 bp
Sequences
Splice sites
3' ss Seq
GTTGCTTTGTTTTGCCCTAGGTG
3' ss Score
10.55
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
CAATTTTGACTGGAGCACCAGTCGGGCTTGGAAACCCTAGCTCTCTAGGAGTGGGACAGCAGTCCACCCCTAGCCTAAGCACTGTCAGTCAGATTGATCCCAGCTCTATAGAGCGAGCTTATGCTGCTCTCGGACTACCCTATCAAGTAAACCAGATTCCACCACAACCCCCCGTCCAAGCTAAGAATCAACAAAGTCAGCCGTCTGGACAGTCTCCCCAAGGCATGCGGTCCATGAACAACATGA
Seq A exon
GTGCCAGTCCTATGGGTGTAAATGGAGGTGTAGGGGTTCAGACACCGAATCTTCTTTCTGACTCCATGTTGCATTCAACCATAAATTCTCAGAA
Seq C2 exon
CCCAATGATGAATGAAAATGCCAGTGTGGCCTCTCTGGGTCCTTTGCCCACAGCAGCCCAGCCATCTAGTACTGGAATTCGAAAACAGTGGCATGAAGATATTACTCAGGATCTTCGAAACCACCTTGTTCATAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000190-'12-13,'12-12,13-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.807 A=1.000 C2=0.894
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0217211=KIX=PU(25.9=44.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCAGATTCCACCACAACCC
R:
TCCAGTACTAGATGGCTGGGC
Band lengths:
173-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]