MmuEX6055091 @ mm9
Exon Skipping
Gene
ENSMUSG00000055024 | Ep300
Description
E1A binding protein p300 [Source:MGI Symbol;Acc:MGI:1276116]
Coordinates
chr15:81443600-81447293:+
Coord C1 exon
chr15:81443600-81443845
Coord A exon
chr15:81446462-81446555
Coord C2 exon
chr15:81447156-81447293
Length
94 bp
Sequences
Splice sites
3' ss Seq
GTTGCTTTGTTTTGCCCTAGGTG
3' ss Score
10.55
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CAATTTTGACTGGAGCACCAGTTGGGCTTGGAAACCCTAGCTCTCTAGGAGTGGGGCAGCAGTCCACTCCTAGCCTAAGCACTGTTAGTCAGATTGACCCCAGCTCTATAGAGCGAGCTTACGCTGCTCTTGGACTACCCTATCAAGTAAACCAGATTCCACCACAACCCCAGGTACAAGCAAAGAATCAACAAAGCCAGCCATCTGGACAGTCTCCCCAGGGCATGCGGTCTGTGAACAACATGA
Seq A exon
GTGCTAGTCCTATGGGTGTAAATGGAGGTGTTGGGGTTCAGACGCCAAATCTTCTTTCTGACTCCATGTTGCATTCAACTATAAATTCTCAAAA
Seq C2 exon
CCCAATGATGAGTGAAAATGCTGGTGTGGCCTCCCTGGGTCCTTTGCCAACAGCAGCTCAGCCATCTAGTACTGGAATTCGAAAACAGTGGCATGAAGATATTACTCAGGATCTTCGAAACCACCTTGTTCATAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055024-'10-10,'10-9,11-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.783 A=1.000 C2=0.894
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0217211=KIX=PU(25.9=44.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCAGATTCCACCACAACCC
R:
ACTAGATGGCTGAGCTGCTGT
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: