DreEX6016514 @ danRer10
Exon Skipping
Gene
ENSDARG00000061108 | ep300b
Description
E1A binding protein p300 b [Source:ZFIN;Acc:ZDB-GENE-080403-15]
Coordinates
chr3:24905751-24909014:-
Coord C1 exon
chr3:24908787-24909014
Coord A exon
chr3:24905964-24906072
Coord C2 exon
chr3:24905751-24905882
Length
109 bp
Sequences
Splice sites
3' ss Seq
TCTTAAACTGTGTGCTGCAGCAG
3' ss Score
5.12
5' ss Seq
GAGGTATTG
5' ss Score
7.44
Exon sequences
Seq C1 exon
CTCTATTGGGAGGTGCTGGGATGGCCATGGGTGGTCCTTTAGGTGGGTCATTACCTGGTGGCCAACCTTCAGCTCCAAACATTAACCCACCCAGTCAGATTGACCCAAGCTCCATCGAGAGGGCGTATGCTGCTCTTGGACTCACTTACCAAGGGAACCAAGCATCCAATCAAAATCAGCAGACCTCTGTACCCGGTCAACCTGGCATGAGGTCGCTCAACAACATGG
Seq A exon
CAGGTGGGAACTCAATGGGAGTGAATGGAGGAGTCGGTGCGCCGATGTCAAACCAGCATCCAGGAATGCTGCCCGATGGCATGCTGCACAGGAACATGACCGCTCAGAG
Seq C2 exon
CTTGATGAATGACAGCTCTGGTGTTGGTAACATGGGCTCTGCTGCGACCGCTACACCGCCCTCTGCTGGAATGAGGAAGAGCTGGCATGAAGACATCACACAGGACCTCCGCAATCACCTTGTACACAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061108-'5-9,'5-7,6-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.870 A=1.000 C2=0.889
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0217211=KIX=PU(25.9=46.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGTGGTCCTTTAGGTGGG
R:
GCAGAGCCCATGTTACCAACA
Band lengths:
244-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]