GgaEX6001952 @ galGal4
Exon Skipping
Gene
ENSGALG00000011992 | EP300
Description
E1A binding protein p300 [Source:HGNC Symbol;Acc:HGNC:3373]
Coordinates
chr1:49664556-49668431:-
Coord C1 exon
chr1:49668195-49668431
Coord A exon
chr1:49665430-49665523
Coord C2 exon
chr1:49664556-49664690
Length
94 bp
Sequences
Splice sites
3' ss Seq
ATACTACTTATTTTTTCTAGGTG
3' ss Score
9.24
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CGCTACTGGGTGGAGCTGCAGTAGGACTTGCAAACACCGGCTCCGTGGGTGTGGGGCAGCAGACTACGCCCAGCATAAGCACTACCAGCCAGATAGACCCCAGCTCCATCGAGAGAGCCTATGCAGCCCTTGGACTAACCTATCAAGGGAACCAGATGCAGACACAGTCTCAGGCTCAAGTGAAGAATCAGCAGCAAGGACAGTCACCCCAGGGTCTGCGCCCAATGAATCCTATGA
Seq A exon
GTGCAAATCCAATGGGAGTAAATGGAGGAGTAGGAGTTCAAACCCCCAGTCTGCTGCCTGACTCAATGTTACATTCAACCATGAATTCCCAAAA
Seq C2 exon
CTCCATGATGAGTGAAAGCGCCAATGTTGCTAGTCTGGGGGCTATGCCAACAGCTCAGCCATCCAATACAGGAATTCGAAAGCAGTGGCATGAAGATATTACTCAGGATCTTCGAAATCATCTTGTTCATAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011992-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.700 A=1.000 C2=0.891
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0217211=KIX=PU(25.9=45.7)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGACCCCAGCTCCATCGAG
R:
GGCGCTTTCACTCATCATGGA
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]